Peer reviewed journal articles

Lamit, L.J., Romanowicz, K.J., Potvin, L.R., Rivers, A.R., Singh, K., Lennon, J.T., Tringe, S.G., Kane, E.S., Lilleskov, E.A., 2017. Patterns and drivers of fungal community depth stratification in Sphagnum peat. FEMS Microbiol. Ecol. 93, 1–21. doi:10.1093/femsec/fix082

Bowers, R.M., Kyrpides, N.C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T.B.K., Schulz, F., Jarett, J., Rivers, A.R., Eloe-Fadrosh, E.A., Tringe, S.G., Ivanova, N.N., Copeland, A., Clum, A., Becraft, E.D., Malmstrom, R.R., Birren, B., Podar, M., Bork, P., Weinstock, G.M., Garrity, G.M., Dodsworth, J.A., Yooseph, S., Sutton, G., Glöckner, F.O., Gilbert, J.A., Nelson, W.C., Hallam, S.J., Jungbluth, S.P., Ettema, T.J.G., Tighe, S., Konstantinidis, K.T., Liu, W.-T., Baker, B.J., Rattei, T., Eisen, J.A., Hedlund, B., McMahon, K.D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G.W., Rinke, C., Kyrpides, N.C., Schriml, L., Garrity, G.M., Hugenholtz, P., Sutton, G., Yilmaz, P., Meyer, F., Glöckner, F.O., Gilbert, J.A., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D.H., Eren, A.M., Schriml, L., Banfield, J.F., Hugenholtz, P., Woyke, T., 2017. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat. Biotechnol. 35, 725–731. doi:10.1038/nbt.3893

Paez-Espino, D., Chen, I.-M.A., Palaniappan, K., Ratner, A., Chu, K., Szeto, E., Pillay, M., Huang, J., Markowitz, V.M., Nielsen, T., Huntemann, M., K. Reddy, T.B., Pavlopoulos, G.A., Sullivan, M.B., Campbell, B.J., Chen, F., McMahon, K., Hallam, S.J., Denef, V., Cavicchioli, R., Caffrey, S.M., Streit, W.R., Webster, J., Handley, K.M., Salekdeh, G.H., Tsesmetzis, N., Setubal, J.C., Pope, P.B., Liu, W.-T., Rivers, A.R., Ivanova, N.N., Kyrpides, N.C., 2017. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45, D457–D465. doi:10.1093/nar/gkw1030

Rivers, A.R., Burns, A.S., Chan, L.-K., Moran, M.A., 2016. Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3. Front. Microbiol. 7. doi:10.3389/fmicb.2016.00380

Moran, M.A., Satinsky, B., Gifford, S.M., Luo, H., Rivers, A., Chan, L.-K., Meng, J., Durham, B.P., Shen, C., Varaljay, V.A., Smith, C.B., Yager, P.L., Hopkinson, B.M., 2013. Sizing up metatranscriptomics. ISME J. 7, 237–43. doi:10.1038/ismej.2012.94

Kemp, D.W., Rivers, A.R., Kemp, K.M., Lipp, E.K., Porter, J.W., Wares, J.P., 2015. Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata. PLoS One 10, e0143790. doi:10.1371/journal.pone.0143790

Beier, S., Rivers, A.R., Moran, M.A., Obernosterer, I., 2015. The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater. Environ. Microbiol. 17, 3466–3480. doi:10.1111/1462-2920.12434

Beier, S., Rivers, A.R., Moran, M.A., Obernosterer, I., 2015. Phenotypic plasticity in heterotrophic marine microbial communities in continuous cultures. ISME J. 9, 1141–51. doi:10.1038/ismej.2014.206

McIntyre, P.B., Michel, E., France, K., Rivers, A., Hakizimana, P., Cohen, A.S., 2005. Individual- and Assemblage-Level Effects of Anthropogenic Sedimentation on Snails in Lake Tanganyika. Conserv. Biol. 19, 171–181. doi:10.1111/j.1523-1739.2005.00456.x

Rivers, A.R., Smith, C.B., Moran, M.A., 2014. An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3. Stand. Genomic Sci. 9, 11. doi:10.1186/1944-3277-9-11

Rivers, A.R., Rose, A.L., Webb, E.A., 2013. An online calculator for marine phytoplankton iron culturing experiments. J. Phycol. 49, 1017–1021. doi:10.1111/jpy.12107

Rivers, A.R., Sharma, S., Tringe, S.G., Martin, J., Joye, S.B., Moran, M.A., 2013. Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill. ISME J. 19, 1–15. doi:10.1038/ismej.2013.129 Rivers, A.R., Jakuba, R.W., Webb, E.A., 2009. Iron stress genes in marine Synechococcus and the development of a flow cytometric iron stress assay. Environ. Microbiol. 11, 382–396. doi:10.1111/j.1462-2920.2008.01778.x

Teske, A., Edgcomb, V., Rivers, A., Thompson, J., de Alvin, V.G., Molyneaux, S., Wirsen, C., 2009. A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates. Extremophiles 13, 905–915. doi:10.1007/s00792-009-0278-7